mclumi.fastq package

Submodules

mclumi.fastq.Read module

class mclumi.fastq.Read.read

Bases: object

fromgz(fastq_fpn)

Note

read and parse a Fastq file.

Parameters

fastq_fpn – the path of a fastq file

Returns

Return type

tuple consisting of names, seqs, placeholders, qualities

mclumi.fastq.Write module

class mclumi.fastq.Write.write

Bases: object

togz(list_2d, sv_fpn, symbol='_')

Parameters

• list_2d

• sv_fpn

• symbol

Module contents