mclumi.util package

Submodules

mclumi.util.Console module

class mclumi.util.Console.console(placeholder='logger: ', verbose=False)

Bases: object

check(content)
print(content)
property verbose

mclumi.util.Folder module

class mclumi.util.Folder.folder

Bases: object

osmkdir(DIRECTORY)
Parameters

DIRECTORY

mclumi.util.Hamming module

class mclumi.util.Hamming.hamming

Bases: object

general(s1, s2)
Parameters

  • s1

  • s2

mclumi.util.Number module

class mclumi.util.Number.number(*args, **kwargs)

Bases: object

uniform(low, high, num, use_seed=True, seed=1)
Parameters

  • low

  • high

  • num

  • use_seed

  • seed

mclumi.util.Reader module

class mclumi.util.Reader.reader

Bases: object

excel(df_fpn, sheet_name='Sheet1', header=None, is_utf8=False)
Parameters

  • df_fpn

  • sheet_name

  • header

  • is_utf8

generic(df_fpn, df_sep='\t', skiprows=None, header=None, is_utf8=False)
Parameters

  • df_fpn

  • df_sep

  • skiprows

  • header

  • is_utf8

mclumi.util.Single module

class mclumi.util.Single.single

Bases: object

get(**kwargs)
getEleTrimmed(**kwargs)
getLisTrimmed(**kwargs)
todict(nucleotides, reverse=False)
Parameters

  • nucleotides

  • reverse

static trim(action)

mclumi.util.Writer module

class mclumi.util.Writer.writer

Bases: object

excel(df, sv_fpn=None, sheet_name='Sheet1', header=None, index=False, id_from=0)
Parameters

  • df

  • sv_fpn

  • sheet_name

  • header

  • index

  • id_from

generic(df, sv_fpn, df_sep='\t', header=None, index=False, id_from=0)
Parameters

  • df

  • sv_fpn

  • df_sep

  • header

  • index

  • id_from

Module contents